LOCUS pCDB-Cas9-PDS 8959 bp DNA circular UNA 23-FEB-2023
DEFINITION .
ACCESSION urn.local...r-cixsr3o
VERSION urn.local...r-cixsr3o
KEYWORDS .
SOURCE
ORGANISM .
FEATURES Location/Qualifiers
attL1 1..100
/Color="#00cccc"
/created_by="mamee"
/note="Derived using Geneious Prime 2022.1.1 'Annotate
from Database' based on nucleotide similarity"
/Transferred_From="attL1"
/Transferred_Similarity="99.00%"
/Primary_Match="99.00%; Adjusted-Interval-0:0/0; attL1"
/label="attL1"
promoter 107..970
/regulatory_class="promoter"
/gene="CaMV 35S"
/note="internal BsaI recognition site removed"
/modified_by="mamee"
/note="Derived using Geneious Prime 2022.1.1 'Annotate
from Database' based on nucleotide similarity"
/Transferred_From="pCaMV 35S - Golden Gate"
/Transferred_Similarity="100.00%"
/Primary_Match="100.00%; Adjusted-Interval-0:0/0; p35S (pCaMV 35S - Golden
Gate)"
/label="p35S"
Linker 975..998
/gene="B-dummy"
/note="default module for GreenGate"
/modified_by="mamee"
/label="B-dummy 5'UTR"
CDS 1005..5108
/modified_by="mamee"
/note="Derived using Geneious Prime 2020.2.2 'Annotate
from Database' based on nucleotide similarity"
/Transferred_From="AtCas9"
/Transferred_Similarity="100.00%"
/Adjusted_Transferred_Similarity="99.13%"
/Primary_Match="100.00%; Adjusted-Interval-0:0/-36
(adjusted to 99.13%; Adjusted-Interval-0:0/0); AtCas9"
/label="AtCAS9"
NLS 5121..5141
/created_by="warddecaestecker"
/modified_by="wacae"
/note="Derived using Geneious Prime 2020.2.2 'Annotate
from Database' based on protein similarity"
/Transferred_From="NLS SV40"
/Transferred_Translation_Similarity="100.00%"
/Primary_Match="100.00%; Adjusted-Interval-0:0/0; SV40 (NLS SV40)"
/label="SV40"
Linker 5149..5194
/gene="D-dummy"
/note="default module for GreenGate"
/modified_by="mamee"
/label="D-dummy 3'UTR"
terminator 5199..5845
/regulatory_class="terminator"
/note="RBCS terminator (from Pisum sativum)"
/modified_by="mamee"
/label="tRbcS"
promoter 5852..6239
/vntifkey=29
/modified_by="thjac"
/modified_by="wacae"
/note="Derived using Geneious Prime 2020.2.2 'Annotate
from Database' based on nucleotide similarity"
/Transferred_From="AtU6-26"
/Transferred_Similarity="100.00%"
/Primary_Match="100.00%; Adjusted-Interval-0:0/0; AtU6-26"
/label="AtU6-26"
N20 6240..6259
/created_by="cdebruyn"
/label="N20"
Scaffold 6260..6342
/%_Identity=100
/Motif="GTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGGCTAGTCCGTTATCAAC
TTGAAAAAGTGGCACCGAGTCGGTGCTTTTTTT"
/annotation_group="Scaffold: 451 -> 533"
/modified_by="wacae"
/note="Derived using Geneious Prime 2020.2.2 'Annotate
from Database' based on nucleotide similarity"
/Transferred_From="SpCas9 Scaffold"
/Transferred_Similarity="100.00%"
/Primary_Match="100.00%; Adjusted-Interval-0:0/0; Scaffold
(SpCas9 Scaffold)"
/label="Scaffold"
attL2 complement(6348..6447)
/created_by="mamee"
/Color="#00cccc"
/modified_by="mamee"
/note="Derived using Geneious Prime 2022.1.1 'Annotate
from Database' based on nucleotide similarity"
/Transferred_From="attL2"
/Transferred_Similarity="100.00%"
/Primary_Match="100.00%; Adjusted-Interval-0:0/0; attL2"
/label="attL2"
primer complement(6485..6505)
/note="Derived using Geneious Prime 2020.2.2 'Annotate
from Database' based on nucleotide similarity"
/Transferred_From="pCDB-Cas9 - GWM13R"
/Transferred_Similarity="100.00%"
/Primary_Match="100.00%; Adjusted-Interval-0:0/0; GWM13R
(pCDB-Cas9 - GWM13R)"
/label="GWM13R"
promoter 6566..6616
/created_by="chgai"
/X-Transferred_From="pCG034_pKan_Kan-CBE"
/X-Transferred_Similarity="100.00%"
/X-Primary_Match="100.00%; Adjusted-Interval-0:0/0;
Kan_promoter (pCG034_pKan_Kan-CBE)"
/X-Alternative_Match="100.00%; Adjusted-Interval-0:0/0;
Kan_promoter (pCG040_ABE-Nuc-NLS_Kan
-reporter_control)"
/X-Alternative_Match="100.00%; Adjusted-Interval-0:0/0;
Kan_promoter (pCG043_Kan-ABE-Dest_co
ntrol_ccdB)"
/X-Alternative_Match="100.00%; Adjusted-Interval-0:0/0;
Kan_promoter (pCG046_ABE-LbCas12a-NL
S_Kan_control)"
/X-Alternative_Match="100.00%; Adjusted-Interval-0:0/0;
Kan_promoter (pCG005_pGGD-pKan-KanR-
E)"
/X-Alternative_Match="100.00%; Adjusted-Interval-0:0/0;
Kan_promoter (pCG006_pGGA-Kan_promot
er-B)"
/X-Alternative_Match="100.00%; Adjusted-Interval-0:0/0;
Kan_promoter (pCG035_pKan_Kan)"
/X-Alternative_Match="100.00%; Adjusted-Interval-0:0/0;
Kan_promoter (pCG039_ABE-N7-NLS_Kan-
reporter_control)"
/X-Alternative_Match="100.00%; Adjusted-Interval-0:0/0;
Kan_promoter (pCG041_ABE-SV40-NLS_Ka
n-reporter_control)"
/X-Alternative_Match="100.00%; Adjusted-Interval-0:0/0;
Kan_promoter (pCG054_Kan_CBE_control
)"
/modified_by="mamee"
/note="Derived using Geneious Prime 2022.1.1 'Annotate
from Database' based on nucleotide similarity"
/Transferred_From="KanR"
/Transferred_Similarity="100.00%"
/Primary_Match="100.00%; Adjusted-Interval-0:0/0; kan (KanR)"
/label="kan"
misc_feature 6617..7426
/modified_by="mamee"
/note="Derived using Geneious Prime 2022.1.1 'Annotate
from Database' based on nucleotide similarity"
/Transferred_From="KanR"
/Transferred_Similarity="100.00%"
/Primary_Match="100.00%; Adjusted-Interval-0:0/0; KanR"
/label="KanR"
/note="Geneious type: Bacterial Selection"
rep_origin 7573..8161
/created_by="thjac"
/modified_by="mamee"
/note="Derived using Geneious Prime 2020.2.2 'Annotate
from Database' based on nucleotide similarity"
/Transferred_From="high-copy-number ColE1/pMB1/pBR322/pUC
origin of replication"
/Transferred_Similarity="100.00%"
/Primary_Match="100.00%; Adjusted-Interval-0:0/0;
ColE1/pMB1/pBR322/pUC Ori (high-copy-number
ColE1/pMB1/pBR322/pUC origin of replication)"
/label="ColE1/pMB1/pBR322/pUC Ori"
misc_feature 8710..8877
/Original_Bases
/label
/note="Geneious type: Editing History Insertion"
primer 8928..8948
/label="GWM13F"
ORIGIN
1 caaataatga ttttattttg actgatagtg acctgttcgt tgcaacacat tgatgagcaa
61 tgctttttta taatgccaac tttgtacaaa aaagcaggct taacctccga tccattcggt
121 ccccagatta gccttttcaa tttcagaaag aatgctaacc cacagatggt tagagaggct
181 tacgcagcac gtctcatcaa gacgatctac ccgagcaata atctccagga aatcaaatac
241 cttcccaaga aggttaaaga tgcagtcaaa agattcagga ctaactgcat caagaacaca
301 gagaaagata tatttctcaa gatcagaagt actattccag tatggacgat tcaaggcttg
361 cttcacaaac caaggcaagt aatagagatt ggagtctcta aaaaggtagt tcccactgaa
421 tcaaaggcca tggagtcaaa gattcaaata gaggacctaa cagaactcgc cgtaaagact
481 ggcgaacagt tcatacagag tctcttacga ctcaatgaca agaagaaaat cttcgtcaac
541 atggtggagc acgacacact tgtctactcc aaaaatatca aagatacagt ctcagaagac
601 caaagggcaa ttgagacttt tcaacaaagg gtaatatccg gaaacctcct cggattccat
661 tgcccagcta tctgtcactt tattgtgaag atagtggaaa aggaaggtgg ctcctacaaa
721 tgccatcatt gcgataaagg aaaggccatc gttgaagatg cctctgccga cagtggtccc
781 aaagatggac ccccacccac gaggagcatc gtggaaaaag aagacgttcc aaccacgtct
841 tcaaagcaag tggattgatg tgatatctcc actgacgtaa gggatgacgc acaatcccac
901 tatccttcgc aagacccttc ctctatataa ggaagttcat ttcatttgga gagaacacgg
961 gggacgagct aacagtattc agtcgactgg taccaacagg ctccatggat aagaagtact
1021 ctatcggact cgatatcgga actaactctg tgggatgggc tgtgatcacc gatgagtaca
1081 aggtgccatc taagaagttc aaggttctcg gaaacaccga taggcactct atcaagaaaa
1141 accttatcgg tgctctcctc ttcgattctg gtgaaactgc tgaggctacc agactcaaga
1201 gaaccgctag aagaaggtac accagaagaa agaacaggat ctgctacctc caagagatct
1261 tctctaacga gatggctaaa gtggatgatt cattcttcca caggctcgaa gagtcattcc
1321 tcgtggaaga agataagaag cacgagaggc accctatctt cggaaacatc gttgatgagg
1381 tggcatacca cgagaagtac cctactatct accacctcag aaagaagctc gttgattcta
1441 ctgataaggc tgatctcagg ctcatctacc tcgctctcgc tcacatgatc aagttcagag
1501 gacacttcct catcgagggt gatctcaacc ctgataactc tgatgtggat aagttgttca
1561 tccagctcgt gcagacctac aaccagcttt tcgaagagaa ccctatcaac gcttcaggtg
1621 tggatgctaa ggctatcctc tctgctaggc tctctaagtc aagaaggctt gagaacctca
1681 ttgctcagct ccctggtgag aagaagaacg gacttttcgg aaacttgatc gctctctctc
1741 tcggactcac ccctaacttc aagtctaact tcgatctcgc tgaggatgca aagctccagc
1801 tctcaaagga tacctacgat gatgatctcg ataacctcct cgctcagatc ggagatcagt
1861 acgctgattt gttcctcgct gctaagaacc tctctgatgc tatcctcctc agtgatatcc
1921 tcagagtgaa caccgagatc accaaggctc cactctcagc ttctatgatc aagagatacg
1981 atgagcacca ccaggatctc acacttctca aggctcttgt tagacagcag ctcccagaga
2041 agtacaaaga gattttcttc gatcagtcta agaacggata cgctggttac atcgatggtg
2101 gtgcatctca agaagagttc tacaagttca tcaagcctat cctcgagaag atggatggaa
2161 ccgaggaact cctcgtgaag ctcaatagag aggatcttct cagaaagcag aggaccttcg
2221 ataacggatc tatccctcat cagatccacc tcggagagtt gcacgctatc cttagaaggc
2281 aagaggattt ctacccattc ctcaaggata acagggaaaa gattgagaag attctcacct
2341 tcagaatccc ttactacgtg ggacctctcg ctagaggaaa ctcaagattc gcttggatga
2401 ccagaaagtc tgaggaaacc atcacccctt ggaacttcga agaggtggtg gataagggtg
2461 ctagtgctca gtctttcatc gagaggatga ccaacttcga taagaacctt ccaaacgaga
2521 aggtgctccc taagcactct ttgctctacg agtacttcac cgtgtacaac gagttgacca
2581 aggttaagta cgtgaccgag ggaatgagga agcctgcttt tttgtcaggt gagcaaaaga
2641 aggctatcgt tgatctcttg ttcaagacca acagaaaggt gaccgtgaag cagctcaaag
2701 aggattactt caagaaaatc gagtgcttcg attcagttga gatttctggt gttgaggata
2761 ggttcaacgc atctctcgga acctaccacg atctcctcaa gatcattaag gataaggatt
2821 tcttggataa cgaggaaaac gaggatatct tggaggatat cgttcttacc ctcaccctct
2881 ttgaagatag agagatgatt gaagaaaggc tcaagaccta cgctcatctc ttcgatgata
2941 aggtgatgaa gcagttgaag agaagaagat acactggttg gggaaggctc tcaagaaagc
3001 tcattaacgg aatcagggat aagcagtctg gaaagacaat ccttgatttc ctcaagtctg
3061 atggattcgc taacagaaac ttcatgcagc tcatccacga tgattctctc acctttaaag
3121 aggatatcca gaaggctcag gtttcaggac agggtgatag tctccatgag catatcgcta
3181 acctcgctgg atctcctgca atcaagaagg gaatcctcca gactgtgaag gttgtggatg
3241 agttggtgaa ggtgatggga aggcataagc ctgagaacat cgtgatcgaa atggctagag
3301 agaaccagac cactcagaag ggacagaaga actctaggga aaggatgaag aggatcgagg
3361 aaggtatcaa agagcttgga tctcagatcc tcaaagagca ccctgttgag aacactcagc
3421 tccagaatga gaagctctac ctctactacc tccagaacgg aagggatatg tatgtggatc
3481 aagagttgga tatcaacagg ctctctgatt acgatgttga tcatatcgtg ccacagtcat
3541 tcttgaagga tgattctatc gataacaagg tgctcaccag gtctgataag aacaggggta
3601 agagtgataa cgtgccaagt gaagaggttg tgaagaaaat gaagaactat tggaggcagc
3661 tcctcaacgc taagctcatc actcagagaa agttcgataa cttgactaag gctgagaggg
3721 gaggactctc tgaattggat aaggcaggat tcatcaagag gcagcttgtg gaaaccaggc
3781 agatcactaa gcacgttgca cagatcctcg attctaggat gaacaccaag tacgatgaga
3841 acgataagtt gatcagggaa gtgaaggtta tcaccctcaa gtcaaagctc gtgtctgatt
3901 tcagaaagga tttccaattc tacaaggtga gggaaatcaa caactaccac cacgctcacg
3961 atgcttacct taacgctgtt gttggaaccg ctctcatcaa gaagtatcct aagctcgagt
4021 cagagttcgt gtacggtgat tacaaggtgt acgatgtgag gaagatgatc gctaagtctg
4081 agcaagagat cggaaaggct accgctaagt atttcttcta ctctaacatc atgaatttct
4141 tcaagaccga gattaccctc gctaacggtg agatcagaaa gaggccactc atcgagacaa
4201 acggtgaaac aggtgagatc gtgtgggata agggaaggga tttcgctacc gttagaaagg
4261 tgctctctat gccacaggtg aacatcgtta agaaaaccga ggtgcagacc ggtggattct
4321 ctaaagagtc tatcctccct aagaggaact ctgataagct cattgctagg aagaaggatt
4381 gggaccctaa gaaatacggt ggtttcgatt ctcctaccgt ggcttactct gttctcgttg
4441 tggctaaggt tgagaaggga aagagtaaga agctcaagtc tgttaaggaa cttctcggaa
4501 tcactatcat ggaaaggtca tctttcgaga agaacccaat cgatttcctc gaggctaagg
4561 gatacaaaga ggttaagaag gatctcatca tcaagctccc aaagtactca ctcttcgaac
4621 tcgagaacgg tagaaagagg atgctcgctt ctgctggtga gcttcaaaag ggaaacgagc
4681 ttgctctccc atctaagtac gttaactttc tttacctcgc ttctcactac gagaagttga
4741 agggatctcc agaagataac gagcagaagc aacttttcgt tgagcagcac aagcactact
4801 tggatgagat catcgagcag atctctgagt tctctaaaag ggtgatcctc gctgatgcaa
4861 acctcgataa ggtgttgtct gcttacaaca agcacagaga taagcctatc agggaacagg
4921 cagagaacat catccatctc ttcaccctta ccaacctcgg tgctcctgct gctttcaagt
4981 acttcgatac aaccatcgat aggaagagat acacctctac caaagaagtg ctcgatgcta
5041 ccctcatcca tcagtctatc actggactct acgagactag gatcgatctc tcacagctcg
5101 gtggtgattc aagggctgat cctaagaaga agaggaaggt ttgatcaggt ggatcctaga
5161 taacctttac cttcattccc tgtaaattgg taccctgcaa agctttcgtt cgtatcatcg
5221 gtttcgacaa cgttcgtcaa gttcaatgca tcagtttcat tgcgcacaca ccagaatcct
5281 actgagtttg agtattatgg cattgggaaa actgtttttc ttgtaccatt tgttgtgctt
5341 gtaatttact gtgtttttta ttcggttttc gctatcgaac tgtgaaatgg aaatggatgg
5401 agaagagtta atgaatgata tggtcctttt gttcattctc aaattaatat tatttgtttt
5461 ttctcttatt tgttgtgtgt tgaatttgaa attataagag atatgcaaac attttgtttt
5521 gagtaaaaat gtgtcaaatc gtggcctcta atgaccgaag ttaatatgag gagtaaaaca
5581 cttgtagttg taccattatg cttattcact aggcaacaaa tatattttca gacctagaaa
5641 agctgcaaat gttactgaat acaagtatgt cctcttgtgt tttagacatt tatgaacttt
5701 cctttatgta attttccaga atccttgtca gattctaatc attgctttat aattatagtt
5761 atactcatgg atttgtagtt gagtatgaaa atatttttta atgcatttta tgacttgcca
5821 attgattgac aacatgcatc aatcgactac tctttttttc ttcttcttcg ttcatacagt
5881 ttttttttgt ttatcagctt acattttctt gaaccgtagc tttcgttttc ttctttttaa
5941 ctttccattc ggagtttttg tatcttgttt catagtttgt cccaggatta gaatgattag
6001 gcatcgaacc ttcaagaatt tgattgaata aaacatcttc attcttaaga tatgaagata
6061 atcttcaaaa ggcccctggg aatctgaaag aagagaagca ggcccattta tatgggaaag
6121 aacaatagta tttcttatat aggcccattt aagttgaaaa caatcttcaa aagtcccaca
6181 tcgcttagat aagaaaacga agctgagttt atatacagct agagtcgaag tagtgattgt
6241 ttggatgctg tgatgccatg ttttagagct agaaatagca agttaaaata aggctagtcc
6301 gttatcaact tgaaaaagtg gcaccgagtc ggtgcttttt ttgtattacc cagctttctt
6361 gtacaaagtt ggcattataa gaaagcattg cttatcaatt tgttgcaacg aacaggtcac
6421 tatcagtcaa aataaaatca ttatttgcca tccagctgat atcccctata gtgagtcgta
6481 ttacatggtc atagctgttt cctggcagct ctggcccgtg tctcaaaatc tctgatgtta
6541 cattgcacaa gataaaataa tatcatcatg aacaataaaa ctgtctgctt acataaacag
6601 taatacaagg ggtgttatga gccatattca acgggaaacg tcgaggccgc gattaaattc
6661 caacatggat gctgatttat atgggtataa atgggctcgc gataatgtcg ggcaatcagg
6721 tgcgacaatc tatcgcttgt atgggaagcc cgatgcgcca gagttgtttc tgaaacatgg
6781 caaaggtagc gttgccaatg atgttacaga tgagatggtc agactaaact ggctgacgga
6841 atttatgcct cttccgacca tcaagcattt tatccgtact cctgatgatg catggttact
6901 caccactgcg atccccggaa aaacagcatt ccaggtatta gaagaatatc ctgattcagg
6961 tgaaaatatt gttgatgcgc tggcagtgtt cctgcgccgg ttgcattcga ttcctgtttg
7021 taattgtcct tttaacagcg atcgcgtatt tcgtctcgct caggcgcaat cacgaatgaa
7081 taacggtttg gttgatgcga gtgattttga tgacgagcgt aatggctggc ctgttgaaca
7141 agtctggaaa gaaatgcata aacttttgcc attctcaccg gattcagtcg tcactcatgg
7201 tgatttctca cttgataacc ttatttttga cgaggggaaa ttaataggtt gtattgatgt
7261 tggacgagtc ggaatcgcag accgatacca ggatcttgcc atcctatgga actgcctcgg
7321 tgagttttct ccttcattac agaaacggct ttttcaaaaa tatggtattg ataatcctga
7381 tatgaataaa ttgcagtttc atttgatgct cgatgagttt ttctaatcag aattggttaa
7441 ttggttgtaa cactggcaga gcattacgct gacttgacgg gacggcgcaa gctcatgacc
7501 aaaatccctt aacgtgagtt acgcgtcgtt ccactgagcg tcagaccccg tagaaaagat
7561 caaaggatct tcttgagatc ctttttttct gcgcgtaatc tgctgcttgc aaacaaaaaa
7621 accaccgcta ccagcggtgg tttgtttgcc ggatcaagag ctaccaactc tttttccgaa
7681 ggtaactggc ttcagcagag cgcagatacc aaatactgtt cttctagtgt agccgtagtt
7741 aggccaccac ttcaagaact ctgtagcacc gcctacatac ctcgctctgc taatcctgtt
7801 accagtggct gctgccagtg gcgataagtc gtgtcttacc gggttggact caagacgata
7861 gttaccggat aaggcgcagc ggtcgggctg aacggggggt tcgtgcacac agcccagctt
7921 ggagcgaacg acctacaccg aactgagata cctacagcgt gagctatgag aaagcgccac
7981 gcttcccgaa gggagaaagg cggacaggta tccggtaagc ggcagggtcg gaacaggaga
8041 gcgcacgagg gagcttccag ggggaaacgc ctggtatctt tatagtcctg tcgggtttcg
8101 ccacctctga cttgagcgtc gatttttgtg atgctcgtca ggggggcgga gcctatggaa
8161 aaacgccagc aacgcggcct ttttacggtt cctggccttt tgctggcctt ttgctcacat
8221 gttctttcct gcgttatccc ctgattctgt ggataaccgt attaccgcct ttgagtgagc
8281 tgataccgct cgccgcagcc gaacgaccga gcgcagcgag tcagtgagcg aggaagcgga
8341 agagcgccca atacgcaaac cgcctctccc cgcgcgttgg ccgattcatt aatgcagctg
8401 gcacgacagg tttcccgact ggaaagcggg cagtgagcgc aacgcaatta atacgcgtac
8461 cgctagccag gaagagtttg tagaaacgca aaaaggccat ccgtcaggat ggccttctgc
8521 ttagtttgat gcctggcagt ttatggcggg cgtcctgccc gccaccctcc gggccgttgc
8581 ttcacaacgt tcaaatccgc tcccggcgga tttgtcctac tcaggagagc gttcaccgac
8641 aaacaacaga taaaacgaaa ggcccagact tccgactgag cctttcgttt tatttgatgc
8701 ctggcagttt atggcgggcg tcctgcccgc caccctccgg gccgttgctt cacaacgttc
8761 aaatccgctc ccggcggatt tgtcctactc aggagagcgt tcaccgacaa acaacagata
8821 aaacgaaagg cccagacttc cgactgagcc tttcgtttta tttgatgcct ggcagttccc
8881 tactctcgcg ttaacgctag catggatgtt ttcccagtca cgacgttgta aaacgacggc
8941 cagtcttaag ctcgggccc
//